001 /*
002 * Java Genetic Algorithm Library (jenetics-3.0.0).
003 * Copyright (c) 2007-2014 Franz Wilhelmstötter
004 *
005 * Licensed under the Apache License, Version 2.0 (the "License");
006 * you may not use this file except in compliance with the License.
007 * You may obtain a copy of the License at
008 *
009 * http://www.apache.org/licenses/LICENSE-2.0
010 *
011 * Unless required by applicable law or agreed to in writing, software
012 * distributed under the License is distributed on an "AS IS" BASIS,
013 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
014 * See the License for the specific language governing permissions and
015 * limitations under the License.
016 *
017 * Author:
018 * Franz Wilhelmstötter (franz.wilhelmstoetter@gmx.at)
019 */
020 package org.jenetics;
021
022 import static java.util.Objects.requireNonNull;
023 import static org.jenetics.internal.util.Equality.eq;
024
025 import java.util.Iterator;
026 import java.util.Objects;
027 import java.util.RandomAccess;
028
029 import org.jenetics.internal.util.Equality;
030 import org.jenetics.internal.util.Hash;
031 import org.jenetics.internal.util.reflect;
032
033 import org.jenetics.util.ISeq;
034 import org.jenetics.util.Verifiable;
035
036 /**
037 * The abstract base implementation of the Chromosome interface. The implementors
038 * of this class must assure that the protected member {@code _genes} is not
039 * {@code null} and the length of the {@code genes} > 0.
040 *
041 * @param <G> the gene type.
042 *
043 * @author <a href="mailto:franz.wilhelmstoetter@gmx.at">Franz Wilhelmstötter</a>
044 * @since 1.0
045 * @version 2.0 — <em>$Date: 2014-12-28 $</em>
046 */
047 public abstract class AbstractChromosome<G extends Gene<?, G>>
048 implements
049 Chromosome<G>,
050 RandomAccess
051 {
052 private static final long serialVersionUID = 1;
053
054 /**
055 * Array of genes which forms the chromosome. This array must
056 * be initialized by the derived classes.
057 */
058 protected transient ISeq<G> _genes = null;
059
060 /**
061 * Indicates whether this chromosome is valid or not. If the variable is
062 * {@code null} the validation state hasn't been calculated yet.
063 */
064 protected transient Boolean _valid = null;
065
066 /**
067 * Create a new {@code AbstractChromosome} from the given {@code genes}
068 * array. The genes array is not copied, but sealed, so changes to the given
069 * genes array doesn't effect the genes of this chromosome.
070 *
071 * @param genes the genes that form the chromosome.
072 * @throws NullPointerException if the given gene array is {@code null}.
073 * @throws IllegalArgumentException if the length of the gene array is
074 * smaller than one.
075 */
076 protected AbstractChromosome(final ISeq<? extends G> genes) {
077 requireNonNull(genes, "Gene array");
078 assert (genes.forAll(Objects::nonNull)) : "Found at least on null gene.";
079
080 if (genes.length() == 0) {
081 throw new IllegalArgumentException(
082 "The genes sequence must contain at least one gene."
083 );
084 }
085
086 _genes = reflect.cast(genes);
087 }
088
089 @Override
090 public G getGene(final int index) {
091 return _genes.get(index);
092 }
093
094 @Override
095 public ISeq<G> toSeq() {
096 return _genes;
097 }
098
099 @Override
100 public boolean isValid() {
101 if (_valid == null) {
102 _valid = _genes.forAll(Verifiable::isValid);
103 }
104
105 return _valid;
106 }
107
108 @Override
109 public Iterator<G> iterator() {
110 return _genes.iterator();
111 }
112
113 @Override
114 public int length() {
115 return _genes.length();
116 }
117
118 @Override
119 public int hashCode() {
120 return Hash.of(getClass()).and(_genes).value();
121 }
122
123 @Override
124 public boolean equals(final Object obj) {
125 return Equality.of(this, obj).test(ch -> eq(_genes, ch._genes));
126 }
127
128 @Override
129 public String toString() {
130 return _genes.toString();
131 }
132
133 }
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